Archive for December, 2007

2008: The year of DNA

December 29, 2007

Genealogy

I have just sent my DNA in to Ancerstry.com. I am investigating my parental linage via the Y chromosome and my maternal linage via the mitochondrial DNA. For those that do not know, the Y chromosome is past from father to son. For instance, my father, I, my sons and their sons all have the same Y chromosome. And that fellow should be identical to that of my grandfather, his father etc. But from time to time there are small mutation that creep in. This is why all of us men do not have the same Y. And using that information one can determine how closely you one man is related to another man. The only problem is it really is telling you how close your Y chromosome is and since ever generation gets half of its genes from each parent, you have to the portion that this represents has to be divided by two for each generation. For instance only an 8th of my came from my great grandfather (my father’s father’s father). The same thing is true on the maternal line. The Mitochondrial DNA is not really our human DNA at all. It is from bacteria that got trapped inside the egg way back when and gets passed from mother to children. Men cannot pass it along so our Mitochondrial DNA comes down the linage of our mothers. Ancestry is building up a data base of DNA to help its members not only get insight into their genetic past (in the limited way I described) but also to connect to other members that are participating in the data base (provided they give permission). So in my cased, I know all the sons of my great grandfather (paternal linage). But if my great grandfather, Abraham Goldfinger (I was a Goldfinger when I was born), had a brother, who had a son, who had a son, who had a son that was also in the data base, I could discover him. I think we would be fourth cousins. Same thing on my mother linage side. In this case I would have to go back even further since to the sisters of my great grandmother, Bessie Levy (Borodinsky). She had sisters for instance that stayed in the Ukraine and I am not sure what happened to all of them (although it is likely that they were killed in the Holocaust like all the other members of my family that stayed behind that I know of). Of course there can be man relatives with the same y-chromosome that goes back even further than Abraham Goldfinger. And I can also use the same technique to find other relatives if I can get some of my cousins to cooperate. For instance there is a copy of my mother, father’s y chromosome living in Israel (we are third cousins). The is a copy of my mother’s mother’s father’s Y chromosome in a second cousins body. In fact, I might be able to get y and mitochondrial DNA from all my great grandparents (but it is going to be a lot of work and a lot of money). Not sure I want to go this far especially since, I know so much about my families genealogy and they are pretty uniformed. In 1880, they all lived in eastern Europe (Galicia for the most part). They were all Jewish. The all spoke the same language, Yiddish, and the all had the same religion. They pretty much at the same kind of food. And they were all in the clothing business (tailors and tanners).

Health

I am going to have my genes screened by a company, Navigenics that was formed by my dear friend David Agus (a great scientist), The idea is to determine if one has high probability for some disease (like heart disease) where there is some preventative action that one can take. Your info goes into a data base where it is compared to indicators of potential problems. You pay a onetime fee and then a yearly fee if you want to keep getting updates. I am a bit on the fence about this since it may just give me more to worry about but I also believe that this is the future of medicine.  The December issue of Wired has a good article about all this.

One man’s vision or no man’s vision: Bush vs. Putin

December 23, 2007

I have been really torn about switching from the Windows environment to the Mac environment. While my first personal computer was apple like ( It was actually an ACE 1000 which was an apple II clone made by Franklin Computer where I was president in 1983), I pretty much switched over to the what we called at that time the IBM PC world when I joined Intel about a year later.  I did have a MAC for awhile in the early 90’s which I used to run a Midi (music) sequencer called Vision (I was on the board of Opcode) but used an PC for everything else.  I think with the introduction of Windows, we started to refer to the IBM compatible world as the windows world. Later somebody called it the Wintel world but I can tell you Intel had much less to do with shaping the evolution of this type of computer than Microsoft.   Besides working for the company that made the micro processor, I like the openness of the windows platform.  I also liked being able to use all the software I used at work. And there were so many manufactures of the windows pc that I could find the computers I liked for a good price.  I made a tradeoff I new between complexity, functionality and usability.  Apple seemed to be losing out in the market place (which was fine with me).  Steve Jobs was kicked out in 1986 which was fine with me since he had done everything he could to kill Franklin (which went bankrupt because of a law suit with Apple in 1884). But then he came back and has transformed apple into a leading company with reflects a vision.  His vision. Anyway, there is a lot more to this story but let me jump ahead. I recently bought a beautiful small and elegant notebook from Sony (a Vaio TZ170N) and it came with Vista. My life has been a hell since (well not all of my life but a definite portion).  Vista is horrible.  I have to  fight with it all the time to get key things to work. Nothing goes smoothly.  And it is terribly slow.  It can take me five minutes to get it to connect to a new wireless network.  In the mean time my wife (who is not very technical) connects to the net on her iMac Pro in a  minute or so.     Given all the discussion about the upcoming elections, I realized that the choice in computing is between two types of leaders:  The George Bush kind (incompetent, greedy, and arrogant), Vladimir Putin kind (focused, power loving and arrogant).

I am just waiting for all the software I need to move to the net and I will just run Linux.  Of course, I may be giving up all my personal information to Google in exchange.

Thought Experiments and Bubble Baths

December 7, 2007

avram-bubble-bath-1.jpg 

 

 

When I was a child, my hero was Albert Einstein (as well as Flash Gordon and Superman) as I have mentioned in earlier posts.  Albert had four things that I identified with; 1) lots of crazy curly hair, 2)  a Jewish mother, 3) could not tie his shoes laces  (so my mother said) and 4) he did thought experiments like me although his would turn out to have far greater significant.  At that time I did not know we both had a love of music. I may have known that he had but it would not be for sometime  before I learned about my own passion for music.   

I learned to do thought experiments when I was in a covalence home for a year at the age seven.  I had extreme asthma and I think they figured the best way to treat me was to get me away from my mother.  The “home” was by the way located where the Ronald McDonald House is just next to the Stanford Shopping Center for those of you the live in Silicon Valley.  We would get great guest speakers like Roy Rogers and Gene Autry.  Buffalo Bob Smith of the Howdy Doody show was my favorite.  But I spent most of my time in my head and most of that time doing exercise (I did not know you were suppose to exercise with your body).  I would change the colors of walls and furniture.  I would rotate the room or even turn it upside down. I would try to imagine time as an object since I had lots of time to work with.

 A year later when I was back at home that I discovered Albert.  I found a science program on the  radio. That program was  my greatest teacher. Why do I mentioned this now?  I guess I am still at it.  I think constantly about the universe and existence and the role that human beings have in creating it.  I think of the future and the past (I know I am suppose to be in the present and keep trying to do that).   For most of my life, I have been convinced that the future influence the past.  That it calls out to the past and can even effect events but in a subtle and limited way.  I believe that there many paths towards the future but as we get further out in time these path are more limited.  The best way to think of this is that there are many ways for water to run down a mountain but at the end the water will reach bottom and if at the bottom is a  stream, the water will b e carried away by it.   Paul Davies write about this in a sense in his book Cosmic Jackpot

So back to thought experiments:  I am wondering if the internet is evolving in much the same way as the brain has evolved with millions and eventually billions of nodes (neurons) connected to  thousands and thousands of other nodes in a way in which there cannot be a single point of failure.  And if the internet becomes cosmic intelligence than are we the makers of our maker? I know this is a bit weird but I am sitting looking out at a beautiful beach in Uruguay and as always reflecting on the magic of being.


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